Please read the following discussion and analysis of our financial condition and results of operations together with our consolidated financial statements and related notes included under Part II, Item 8 of this Annual Report on Form 10-K. In addition to historical information, this discussion and analysis contains forward-looking statements that involve risks, uncertainties and assumptions. Our actual results may differ materially from those anticipated in these forward-looking statements as a result of certain factors, including, but not limited, to those set forth under "Item 1A - Risk Factors" and elsewhere in this Annual Report on Form 10-K. Unless otherwise noted or the context otherwise requires, references in this Annual Report on Form 10-K to "we," "us" or "our" refer to Zogenix Inc. and its subsidiaries.

This discussion and analysis generally addresses 2021 and 2020 items and year-over-year comparisons between 2021 and 2020. Discussions of 2019 items and year-over-year comparisons between 2020 and 2019 that are not included in this Annual Report on Form 10-K can be found in Part II, Item 7 of our 2020 Annual Report on Form 10-K filed with the SEC on March 1, 2021.

Overview

We are a global biopharmaceutical company committed to developing and commercializing therapies with the potential to transform the lives of patients and their families living with rare diseases. Our first rare disease therapy, Fintepla (fenfluramine) oral solution has been approved by the U.S. Food and Drug Administration (FDA) and the European Medicines Agency (EMA) for the treatment of seizures associated with Dravet syndrome, a rare, severe lifelong epilepsy. We have two additional late-stage development programs underway: Fintepla for the treatment of seizures associated with Lennox-Gastaut syndrome (LGS), another rare epilepsy and MT-1621, an investigational therapy for the treatment of TK2 deficiency (TK2d), a rare genetic disease.

We own and control worldwide development and commercialization rights to Fintepla, which was originally obtained in 2014 pursuant to an acquisition of Brabant Pharma, a privately-held U.K.-based pharmaceutical company. In March 2019, we entered into an exclusive distribution agreement with Nippon Shinyaku Co., Ltd. to distribute Fintepla in Japan, if approved for marketing in that country.

Merger Agreement

On January 18, 2022, we entered into a definitive Agreement and Plan of Merger (the "Merger Agreement"), with UCB S.A., a société anonyme formed under the laws of Belgium ("Parent") and Zinc Merger Sub, Inc., a Delaware corporation and an indirect wholly owned subsidiary of Parent ("Purchaser"), pursuant to which, on the terms and subject to the conditions set forth therein, Merger Sub commenced a tender offer (the "Offer") on February 1, 2022 to acquire all of the Company's outstanding shares of common stock, par value $0.001 per share (the "Company Shares"), at a purchase price of (i) $26.00 per Company Share (the "Closing Amount"), net to the seller thereof in cash, subject to reduction for any applicable withholding taxes and without interest, plus (ii) one non-transferrable contingent value right per Company Share representing the right to receive a contingent payment of $2.00 (each, a "CVR", and the Closing Amount plus one CVR, collectively, or any greater amount per Company Share that may be paid pursuant to the Offer, being hereinafter referred to as the "Offer Price"), net to the holder thereof in cash, subject to reduction for any applicable withholding taxes and without interest, upon the achievement of the milestone specified in, and on the other terms and subject to the other conditions set forth in, the CVR Agreement (as defined in the Merger Agreement). Each CVR represents a non-transferable contractual contingent right to receive a cash payment of $2.00, without interest and less any applicable withholding taxes (the "Milestone Payment"), if, and only if, no later than December 31, 2023, the European Commission approves Zogenix's product Fintepla® as an orphan medicinal product for treatment of seizures associated with Lennox-Gastaut syndrome, following an opinion rendered by the Committee for Orphan Medicinal Products of the European Medicines Agency ("EMA") recommending that fenfluramine hydrochloride for the treatment of Lennox-Gastaut syndrome not be removed from the Community Register of Orphan Medicinal Products (the "Milestone").

Completion of the Offer is subject to the satisfaction or waiver of customary conditions, including (i) (i) there having been validly tendered in accordance with the terms of the Offer and not validly withdrawn, as of immediately prior to the expiration of the Offer, a number of Company Shares that, together with the Company Shares then owned by Parent or Merger Sub, represents at least a majority of the Company Shares then outstanding; (ii) the accuracy of the representations and warranties of the Company contained in the Merger Agreement, subject to certain materiality qualifications; (iii) the Company's compliance in all material respects with its covenants and

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agreements contained in the Merger Agreement; (iv) the expiration or termination of any waiting period (and any extension thereof) applicable to the Offer or the Merger under the Hart-Scott-Rodino Antitrust Improvements Act of 1976, as amended, and the receipt of any other clearance, approval or consent applicable to Offer or the Merger (as defined below) under any applicable antitrust law; (v) the absence of a Company Material Adverse Effect (as defined in the Merger Agreement) that is continuing; and (vi) the absence of any law, regulation, order, injunction or ruling issued or enacted by any government authority of competent jurisdiction that would prohibit or make illegal the consummation of the Offer or the Merger, or that would impose certain remedies or restrictions on the ability of Parent to fully own or operate the Company, its businesses or assets.

We expect the Merger to close in the first half of 2022, subject to the regulatory approvals and other customary closing conditions described above and in the Merger Agreement.

Additional information about the Merger and related transactions is set forth in our filings with the Securities and Exchange Commission, or the SEC.

Fintepla for Patients with Rare Epilepsy Disorders

Dravet Syndrome

On June 25, 2020, the FDA granted approval of Fintepla for the treatment of seizures associated with Dravet syndrome in patients 2 years of age and older. During the third quarter of 2020, we commercially launched Fintepla through a restricted distribution program, called the Fintepla Risk Evaluation and Mitigation Strategy (REMS) Program. On December 18, 2020, the European Commission (EC) granted marketing authorization for Fintepla for the treatment of seizures associated with Dravet syndrome as an add-on therapy to other anti-epileptic medicines for patients two years of age and older. Fintepla will be available in Europe under a controlled access program requested by the EMA to prevent off-label use for weight management and to confirm that prescribing physicians have been informed of the need for periodic cardiac monitoring in patients taking Fintepla. We initially launched Fintepla for sale in Germany in February 2021 and proceeded with a commercial launch in France and expect to expand into other European markets thereafter. The approval for marketing of Fintepla in the U.S. and in the EU was based on positive safety and efficacy results from two randomized, international, multi-center, placebo-controlled Phase 3 trials (Study 1 and Study 2), as well as data from an interim analysis of a long-term, open-label extension study in 330 Dravet syndrome patients treated up to three years.

In September 2020, we reported positive top-line results from our third Phase 3 trial (Study 3) of Fintepla for the treatment of seizures associated with Dravet syndrome. Study 3 corroborates the substantial impact of Fintepla on convulsive seizure reduction in patients with Dravet syndrome as previously demonstrated in Studies 1 and 2. Study 3 expands the countries where Fintepla has been evaluated to include Japan. On December 12, 2021, the Company submitted a New Drug Application to the Japanese Ministry of Health, Labour & Welfare (MHLW) for the marketing approval of Fintepla for the treatment of epileptic seizures associated with Dravet syndrome in Japan. Fintepla received Orphan Drug Designation from Japan's Ministry of Health, Labour & Welfare (MHLW) in August 2021.

Lennox-Gastaut Syndrome

In February 2020, we reported positive top-line results from our Phase 3 multicenter, global LGS trial (Study 1601), a double-blind, placebo-controlled study to assess the safety, tolerability and efficacy of Fintepla when added to a patient's current anti-epileptic regimen. Study 1601 included a total of 263 patients between the ages of 2 and 35 years whose seizures were uncontrolled while on one or more anti-epileptic drugs. The trial met its primary objective of demonstrating that Fintepla at a dose of 0.7 mg/kg/day was superior to placebo in reducing the frequency of drop seizures and demonstrated statistically significant improvements versus placebo in key secondary efficacy measures, including proportion of patients with a clinically meaningful reduction in drop seizure frequency. .

In September 2021, we submitted a supplemental New Drug Application (sNDA) to the FDA for Fintepla for the treatment of seizures associated with LGS. In December 2021, Zogenix announced that the FDA accepted for filing the sNDA, granted our request for Priority Review, and set a Prescription Drug User Fee Act (PDUFA) goal date of March 25, 2022. In December 2021, we submitted a Type II Variation Market Authorization Application to the EMA for Fintepla for the treatment of seizures associated with LGS. If approved, the application would expand the use of Fintepla in the European Union and the United Kingdom beyond patients with Dravet syndrome to include patients with LGS. We plan to make an MAA submission in Japan for LGS in the first quarter of 2023 with an anticipated approval approximately twelve months later.

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Fintepla for Other Potential Indications

In addition to Dravet syndrome and LGS, we are evaluating the treatment potential of Fintepla in other serious, treatment-resistant epileptic syndromes.

MT-1621 for Patients with TK2 Deficiency

As a result of our acquisition of Modis in September 2019, we became a party to the Exclusive License Agreement, by and between Modis and Columbia, dated as of September 26, 2016 (the Columbia Agreement), related to MT-1621. MT-1621 is an investigational deoxynucleoside-combination substrate enhancement therapy in development for the treatment of TK2d, a rare, debilitating, and often fatal genetic mitochondrial DNA depletion disease that primarily affects infants and children and for which there are currently no approved therapies.

In April 2020, we held an End-of-Phase 2 meeting with the FDA and in June 2020, we met with the FDA to discuss chemistry, manufacturing, and controls (CMC) for MT1621. In the meetings, the FDA outlined the additional clinical and non-clinical information needed for an NDA submission. In July 2021, we had a Type B Meeting with the FDA where the FDA confirmed the adequacy of the proposed data packages for an NDA submission due to the rare and serious nature of TK2d and the unmet medical need.

Based on this feedback, we are targeting an NDA submission to the FDA for TK2d in the second half of 2022. In addition, we are conducting a Phase 1 pharmacokinetic (PK) study in renal impairment, as recommended by the FDA, to provide dosing recommendations in the setting of impaired renal function and include the results in the NDA submission. The FDA also concurred with our proposed CMC plan for the prospective NDA submission.

In December 2021, we received Scientific Advice feedback from the EMA supportive of our clinical and non-clinical plan to pursue marketing authorization for the treatment of TK2d patients with the age of onset of TK2d younger than 12 years of age. We are targeting an MAA submission after our anticipated NDA submission.

Collaborative Arrangement with Nippon Shinyaku

In March 2019, we entered into an exclusive distribution agreement (Shinyaku Agreement) with Nippon Shinyaku Co., Ltd. (Shinyaku) for the potential commercialization of Fintepla in Japan. We retained responsibility for clinical development programs for Fintepla, including completion of an additional Phase 3 trial (Study 3) to expand the countries to include Japan, amongst others, where Fintepla for the treatment of Dravet syndrome has been evaluated. Upon signing of the agreement, Shinyaku agreed to make upfront payments of $20.0 million. In addition, we are eligible to receive regulatory and sales-based milestone payments of up to $108.5 million. As of December 31, 2021, we have met the criteria to recognize $3.0 million for a regulatory submission milestone related to Dravet syndrome. Once Fintepla is approved for marketing in Japan, if ever, we are obligated to supply product to Shinyaku and will receive a tiered transfer price of up to a high-double digit percentage of the annual net sales of Fintepla in Japan. In September 2020, we reported positive top-line results from Study 3, which corroborates the substantial impact of Fintepla on convulsive seizure reduction in patients with Dravet syndrome as previously demonstrated in Study 1 and Study 2. On December 12, 2021, the Company submitted a New Drug Application to the Japanese Ministry of Health, Labour & Welfare (MHLW) for the marketing approval of Fintepla for the treatment of epileptic seizures associated with Dravet syndrome in Japan..

Tevard Collaboration, Option and License Agreement

In October 2019, we entered into an option agreement with Tevard Biosciences (Tevard), a privately-held company focused on tRNA-based gene therapies. Under the agreement, Tevard granted us an option to license exclusive rights related to a preclinical development program to identify and develop novel tRNA-based gene therapies for Dravet syndrome. During 2020, we extended the option period to exercise our license rights prior to entering into a collaboration, option and license agreement with Tevard. Payments made under the option agreement were nonrefundable, but may be credited against the upfront payment due if we exercise our option on the preclinical development program. Payments made under the option agreement of $2.0 million in 2019 and $5.5 million in 2020 were included in acquired IPR&D expense and related costs in our consolidated statement of operations.

In December 2020, we exercised the option on the Dravet syndrome program and entered into a collaboration, option and license agreement with Tevard (the Tevard Agreement). The financial terms of the Tevard Agreement included an upfront payment of $5.2 million. In connection with the transaction, we also purchased a convertible

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promissory note issued by Tevard in the amount of $5.0 million. The note matures in December 2022 and carries interest at 3.5% per year. The note will automatically convert into equity securities issued by Tevard in their next equity financing transaction at a conversion price equal to the price paid per share by other investors of the financing transaction.

In addition to the upfront payments, we have agreed to fund Tevard's early discovery activities under the licensed Dravet syndrome program in accordance with the development plan as determined by the parties to the agreement. Once Tevard completes the early discovery activities for a program, we will be responsible for any potential future development and commercialization activities. Tevard is also eligible to receive additional development, regulatory and commercial-related milestone payments of up to $100.0 million for the Dravet program, as well as tiered royalties on future net sales in the single digits that result from the collaboration. We are also entitled to rights of negotiation and rights of first refusal to potentially obtain licenses to compounds subsequently discovered and developed by Tevard. The agreement, if not terminated sooner, would expire upon the expiration of all applicable royalty terms under the agreement with respect to a licensed program or product; however, we have the unilateral right to terminate the agreement with 180 days advanced notice.

As of December 31, 2021, we do not have any current legal or contractual obligations to provide financing to Tevard and our maximum exposure to future loss is limited to the $5.0 million note receivable, which matures in December 2022. While we have committed to fund the Dravet syndrome development program for Tevard's early discovery activities, our obligation to fund these efforts is contingent upon continued involvement in the program and/or the lack of any adverse events which could cause the discontinuance of the program. Our exposure to future losses is limited as we have the unilateral right to terminate the agreement with 180 days advanced notice.

See the above "Business" section for a more complete discussion of our business.

Business Update Regarding the COVID-19 Pandemic

The full extent to which the ongoing coronavirus disease 2019 (COVID-19 pandemic) will directly or indirectly impact our business continues to evolve and its results on our operations and financial condition, will depend on future developments that are highly uncertain, including as a result of new information that may emerge concerning COVID-19, including any related variants, and the actions taken to contain it or treat COVID-19. As a result, we are unable to predict the full impact of the COVID-19 pandemic but it could have a material adverse effect on our business, financial condition, and results of operations.

We are continuing to assess the ongoing impact of COVID-19 on our business operations in an effort to mitigate interruption to our commercialization of Fintepla, clinical programs, research efforts, and other business activities and to ensure the safety and well-being of our employees, partners and patients. COVID-19 infections continue to fluctuate in the U.S. and in many countries worldwide as local surges and new waves of infection continue to be reported, in particular as caused by new variants of the virus that causes COVID-19 and the lack of availability of effective vaccines in certain countries or regions, or failure to utilize available vaccines in other geographies. Although some of the restrictions aimed at minimizing the spread of COVID-19 have been and may from time to time be eased or lifted in the U.S. and other countries from the height of the pandemic, in response to local surges and waves of infection, including those caused by certain variants of the virus, some countries, states, and local governments have maintained or reinstituted these restrictions, or may reinstitute these restrictions from time to time, in response to rising rates of infection. In response to the COVID-19 pandemic, we have implemented precautionary measures to protect the health and safety of our employees, partners, and patients, including providing our employees the flexibility to work remotely from home, as duties permit, and requiring adherence to onsite occupancy limits and appropriate safety measures designed to comply with federal, state, and local guidelines. These safety measures may be eased, lifted, or reinstituted in accordance with updates to such guidelines.

Our ability to successfully commercialize and generate revenue from Fintepla may be directly or indirectly impacted by the COVID-19 pandemic. In addition to our ongoing launch of Fintepla for Dravet syndrome in existing and new markets, we are preparing for a potential product launch of Fintepla for LGS in the U.S., which the FDA granted our supplemental New Drug Application (sNDA) Priority Review with a Prescription Drug User Fee Act (PDUFA) target action date in March 2022. While restrictive safety measures are in place, our sales professionals did not have the same level of in-person interactions with physicians and healthcare providers to conduct educational and promotional activities for Fintepla as they would have absent the COVID-19 pandemic. In response, we have implemented a virtual sales model to supplement traditional means of customer engagement. Although some of these restrictions have been, and may continue to be lifted in certain jurisdictions, the impact of prior and

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continued COVID-19 related safety measures, and the potential for re-imposition of restrictions due to local surges and new waves of infection, including those caused by certain variants of the virus, may adversely affect the ability of our sales professionals to effectively market Fintepla, which may have a negative impact on our sales and our market penetration. In addition, the evolving COVID-19 pandemic could directly or indirectly impact the pace of patient enrollment of our Phase 3 study of Fintepla for the treatment of seizures associated with CDKL5 syndrome (CDD), which we initiated in September 2021. To date, we have not experienced any significant interruptions in our ability to supply Fintepla for commercial use in Dravet syndrome or clinical trials for LGS, or MT1621 to our patients currently enrolled in our clinical trials. We currently do not anticipate any interruptions in supply. Any delays in the completion of our clinical trials and any disruption in our supply chain could have a material adverse effect on our business, results of operations and financial condition.

Critical Accounting Policies and Estimates

Our management's discussion and analysis of our financial condition and results of operations is based on our consolidated financial statements, which have been prepared in conformity with generally accepted accounting principles in the United States (GAAP). The preparation of these consolidated financial statements requires management to make judgments, assumptions, and estimates that affect the amounts reported in our consolidated financial statements and accompanying notes. We evaluate our estimates and assumptions on an ongoing basis. Our estimates are based on historical experience and various other assumptions that we believe to be reasonable under the circumstances.

The significant accounting policies followed, and methods used, in the preparation of our financial statements are detailed in Note 2 to the consolidated financial statements included in this Form 10-K. Due to the material balances of the financial statement elements to which they relate and/or significant judgments, assumptions, and estimates used in the preparation of the consolidated financial statements, we believe the following are critical accounting policies. Actual results could differ from these estimates under different assumptions or conditions and adjustments to such estimates may have a material impact on our financial position and future operating results.

Revenue Recognition

Our revenues consist of product sales of Fintepla and revenues derived from our collaboration arrangement with Nippon Shinyaku Co., Ltd. (Shinyaku).

Net Product Sales

We recognize revenue when control of the promised good or service is transferred to the customer, in an amount that reflects the consideration we expect to be entitled to in exchange for those goods or services. We determine revenue recognition through the following steps: (i) identify the contract(s) with a customer; (ii) identify the performance obligations in the contract; (iii) determine the transaction price; (iv) allocate the transaction price to the performance obligations in the contract; and (v) recognize revenue when (or as) we satisfy a performance obligation. We only apply the five-step model to contracts when collectability of the consideration to which we are entitled in exchange for the goods or services we transfer to the customer is determined to be probable.

We distribute Fintepla in the U.S. through an arrangement with a specialty distributor who is our customer. The specialty distributor subsequently resells our product through its related specialty pharmacy provider to patients and health care providers. Separately, we have or may enter into payment arrangements with various third-party payers including pharmacy benefit managers, private healthcare insurers and government healthcare programs who provide coverage and reimbursement for our products that have been proscribed to a patient.

Revenue from product sales is recorded at the net sales price (transaction price), which includes estimates of consideration payable to our customer and third-party payers for which reserves are established and that result from government rebates, chargebacks, co-pay assistance, prompt-payment discounts and other allowances that are offered under arrangements between us, our customer, and third-party payers related to the sales of Fintepla. These reserves are classified as either reductions of accounts receivable (if the amounts are payable to our customer) or as refund liabilities within current liabilities (if the amounts are payable to a party other than our customer). Amounts billed or invoiced are included in accounts receivable, net on our consolidated balance sheet. Under our current product sales arrangements, we do not have contract assets (unbilled receivables), as we generally invoice our customer before or at the time of revenue recognition, nor contract liabilities, as we do not receive prepayments from our customers prior to product delivery.

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Inputs and assumptions used in our estimates related to our reserves and allowances may fluctuate due to changes in government sponsored programs, payor mix of our customers and the overall economic environment. Historically, actual deductions from sales have not differed significantly from estimated reserves and allowances and we do not expect the differences to be material to our financial position or results of operations.

Research and Development Expense and Accruals

Research and development costs are expensed as incurred unless there is an alternative future use in other research and development projects. Research and development costs include personnel-related costs, outside contracted services including clinical trial costs, contract manufacturing costs for products that have not obtained regulatory approval, facilities costs, fees paid to consultants, milestone payments prior to FDA approval, license fees prior to FDA approval, professional services, travel costs, dues and subscriptions, depreciation, materials used in clinical trials and research and development and costs incurred related to our agreement with Nippon Shinyaku Co., Ltd. We expense costs relating to the purchase and production of pre-approval inventories as research and development expense in the period incurred until FDA approval is received. Payments made prior to the receipt of goods or services to be used in research and development are recorded as prepaid assets on our consolidated balance sheets until the goods or services are realized or consumed. We classify such prepaid assets as current or non-current assets based on our estimates of the timing of when the goods or services will be realized or consumed.

Our expense accruals for clinical trials are based on estimates of the services received from clinical trial investigational sites, contract research organizations (CROs) and other third-party vendors that support us in our research and development efforts. Payments under some of our contracts with these service providers depend on factors such as the achievement of clinical milestones such as the successful enrollment of certain numbers of patients, site initiation, or completion of a clinical trial. In accruing for these services at each reporting date, we estimate the time period over which services will be performed and the level of effort to be expended in each period. If available, we obtain information regarding unbilled services directly from these service providers. However, we may be required to estimate our accrual based only on information available to us. Once established, accruals are adjusted from time to time, as appropriate, in light of additional information. Amounts ultimately incurred in relation to amounts accrued for these services at a reporting date may be substantially higher or lower than our estimates.



Results of Operations

Revenues
                                  Year Ended December 31,
(In thousands)                2021          2020        $ Change
Net product sales          $ 74,740      $  9,587      $ 65,153
Collaboration revenue         6,950         4,056         2,894
Total revenues             $ 81,690      $ 13,643      $ 68,047

We began to generate product revenue following the approval of Fintepla for Dravet syndrome by the FDA and the EMA in 2020. Prior to the commercial launch of Fintepla in July 2020, our revenues were generated solely from a collaboration agreement with Shinyaku entered into in March 2019.

Net Product Sales

Net product sales increased by $65.2 million during the year ended December 31, 2021, compared to the year ended December 31, 2020, as a result of an entire year of Fintepla sales following commercial launch in the U.S. in the third quarter of 2020, and Germany and France in 2021.

We expect net product sales to increase during 2022 as compared to 2021 as we continue to retain and expand our patient base in existing markets, as well as launch our approved product into additional markets following the country-by-country reimbursement approval process in Europe, including the United Kingdom, Italy and Spain.

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Collaboration Revenue

Collaboration revenue increased by $2.9 million during the year ended December 31, 2021, compared to the year ended December 31, 2020, primarily due to the achievement of a $3.0 million regulatory submission milestone for Dravet syndrome under the collaboration arrangement during the fourth quarter of 2021. This resulted in an adjustment in the estimate of the overall transaction price and was recorded on a cumulative catch-up basis, which increased collaboration revenue in the period of adjustment.

As recognition of our collaboration revenue is based on costs incurred to date relative to total estimated costs at completion when measuring progress combined with the uncertainty of when the events underlying various milestones are resolved, we expect our collaboration revenue will fluctuate from period to period.

Cost of Product Sales (Excluding Intangible Asset Amortization)

Cost of product sales (excluding intangible asset amortization) includes the cost of producing and distributing inventories that are related to product revenues during the respective period (including salary-related and stock-based compensation expenses for employees involved with production and distribution, freight and indirect overhead costs) and third-party royalties payable on our net product revenues. Cost of product sales may also include costs related to excess or obsolete inventory adjustment charges, abnormal costs, unabsorbed manufacturing and overhead costs, and manufacturing variances.

For the year ended December 31, 2021, cost of sales primarily consisted of royalties payable on net sales of Fintepla under a license agreement and labeling and packaging costs. Substantially all of the cost of product sold in 2021 were for packaging and labeling as our inventory had a zero-cost basis. Prior to receiving FDA approval for Fintepla, we recorded all manufacturing product costs as research and development expense. We expect our cost of sales for Fintepla to increase as a percentage of net sales in beginning in mid-2022 as we produce and then sell inventory that reflects the full cost of manufacturing.

Research and Development Expense

Research and development (R&D) expense consist of expenses incurred in developing, testing and seeking marketing approval of our product candidates, including: payments made to third-party clinical research organizations (CROs) and investigational sites, which conduct our clinical trials on our behalf, and consultants; expenses associated with regulatory submissions, pre-clinical development and clinical trials; payments to third-party manufacturers, which produce our active pharmaceutical ingredient and finished product; commercial quantities of certain product candidates prior to the date we anticipate that such products will receive regulatory approval, personnel related expenses, such as salaries, benefits, travel and other related expenses, including stock-based compensation; and facility, maintenance, depreciation and other related expenses.

For each of our R&D programs, we incur both external and internal costs. External costs include clinical and non-clinical activities performed by CROs, lab services, purchases of product candidate materials and manufacturing development costs. We track external R&D expenses for each of our key development programs. We have not tracked internal costs on a program-by-program basis because our R&D employees and infrastructure resources are utilized across our product candidate development programs.



The table below sets forth components of our research and development expenses
for the periods presented.
                                                              Year Ended December 31,
(In thousands)                                          2021           2020         $ Change
External costs:
Fintepla for Dravet syndrome                         $  22,023      $  32,287      $ (10,264)
Fintepla for LGS                                        25,013         34,920         (9,907)
MT-1621                                                 23,911         13,703         10,208
Tevard gene-therapy program for Dravet syndrome          3,535            739          2,796
Other(1)                                                 3,904          1,942          1,962
Total external costs                                    78,386         83,591         (5,205)
Internal costs                                          64,273         54,411          9,862
Total research and development expense               $ 142,659      $ 138,002      $   4,657


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(1)Other external costs include early-phase exploratory research programs.

R&D expenses related to Fintepla for Dravet syndrome decreased by $10.3 million year-over-year primarily due to wind-down of clinical activities, partially offset by costs incurred in conjunction with our Phase 3 clinical trial to support the submission of a New Drug Application to the Japanese Ministry of Health, Labour & Welfare (MHLW) for the marketing approval of Fintepla for Dravet syndrome in Japan, which occurred in the fourth quarter of 2021. R&D expenses related to Fintepla for LGS decreased by $9.9 million year-over-year due to lower program costs incurred for external service providers. In the fourth quarter of 2021, we submitted applications in the U.S. and in the EU for regulatory approvals to market Fintepla for the treatment of seizures associated with LGS. R&D expenses related to MT1621 increased by $10.2 million year-over-year as we continued to advance the MT1621 development program, including work related to chemistry, manufacturing, and controls process requirements. We plan to submit an NDA to the FDA in the second half of 2022. Internal costs for research and development activities increased by $9.9 million year-over-year primarily driven by personnel-related expenses from increased R&D headcount.

Selling, General and Administrative Expense


                                                  Year Ended December 31,
(In thousands)                               2021           2020        $ Change

Selling, general and administrative $ 148,524 $ 99,574 $ 48,950

Selling, general and administrative expense consists primarily of salaries and related costs for our personnel, including stock-based compensation, market research expenses for our product and product candidates that are in development and marketing expenses to support our commercial launch efforts, executive, finance, accounting, business development and internal support functions, facility-related costs and consulting fees, in each case not otherwise included in research and development expenses.

Selling, general and administrative expense increased by $49.0 million in 2021 compared to 2020. The increase was primarily attributable to a $16.0 million increase in personnel-related costs, which included a $4.9 million increase for stock-based compensation as we build out our specialized and focused commercial teams in support of our Fintepla product launch in the U.S. and in preparation of our product launch in Europe and headcount additions in general and administrative to support our commercial team. In addition, commercial spend related to market research, strategic and logistic planning for our product launch also contributed $12.9 million to the increase. The remainder of the increase was attributable to higher insurance premium costs and an increase in utilization of professional services, as well as infrastructure and facilities-related costs.

Intangible Asset Amortization

Our intangible asset consist of worldwide development, commercialization and related intellectual property rights including patents and licenses for our product, Fintepla, which at the time of our acquisition in October 2014 was classified as an indefinite-lived IPR&D asset. Upon FDA approval of Fintepla in June 2020, this indefinite-lived asset was reclassified to a finite-lived intangible asset subject to amortization.

In July 2020, we commercially launched Fintepla and commenced amortization of this asset on a straight-line basis over its estimated useful life of 13 years. For the year ended December 31, 2021, intangible asset amortization expense was $7.9 million.

Acquired In-Process Research and Development and Related Costs

Acquired IPR&D consists of existing research and development projects at the time of the acquisition. Projects that qualify as IPR&D assets represent those that have not yet reached technological feasibility and have no alternative future use.

For the year ended December 31, 2021, we did not incur acquired IPR&D expense. For the year ended December 31, 2020, acquired IPR&D expense of $10.7 million consisted of non-refundable, option maintenance payments and exercise fees paid to Tevard to acquire license rights under the Dravet syndrome development program.

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Change in Fair Value of Contingent Consideration


                                                            Year Ended December 31,
(In thousands)                                                 2021                2020
Change in fair value of contingent consideration      $      1,885               $ 8,600

The contingent consideration liability relates to milestone payments under an existing agreement in connection with our prior acquisition in October 2014. At each reporting period, the estimated fair value of the liability is determined by applying an income approach which utilizes variable inputs, such as the probability of success for achieving regulatory/commercial milestones, anticipated future cash flows, risk-free adjusted discount rates, and nonperformance risk. Any change in the fair value of contingent consideration is recorded within operating expenses.

For the year ended December 31, 2021, the $1.9 million increase in the estimated fair value of our contingent consideration liabilities was primarily attributable to the passage of time. For the year ended December 31, 2020, the $8.6 million increase in the estimated fair value of our contingent consideration liabilities was due to the achievement of milestones based on Fintepla regulatory approvals obtained in the U.S. and in the EU.

Other Income (Expense), Net


                                      Year Ended December 31,
(In thousands)                    2021          2020        $ Change
Interest income                $    659      $  2,891      $ (2,232)
Interest expense                (15,276)       (3,759)       11,517
Other income                     11,406        21,777       (10,371)

Total other income, net $ (3,211) $ 20,909 $ (1,086)

Interest income decreased by $2.2 million during the year ended December 31, 2021, compared to the year ended December 31, 2020, as a result of lower average investment balances, which is used to fund our operations. Interest expense increased by $11.5 million during the year ended December 31, 2021, as compared to the year ended December 31, 2020, as our senior convertible notes were outstanding for an entire year. Other income primarily consist of tax election claims made under U.K.'s small and medium-sized enterprises (SMEs) R&D tax relief scheme where we elected to surrender net operating losses that arise from our eligible R&D activities in exchange for a cash payment from the U.K. tax authorities. For the year ended December 31, 2021, we recognized income of $12.4 million related to a tax election claim for the 2019 tax year. For the year ended December 31, 2020, we recognized $19.7 million related to tax election claims for both the 2018 and 2017 tax years.

Income Taxes

For the year ended December 31, 2021, a provision for income taxes of $0.1 million has been recognized related primarily to our subsidiaries located outside of the United States. For the year ended December 31, 2020, income tax benefit of $17.4 million resulted from a change in our valuation allowance balance associated with the completion of our in-process research and development program for Fintepla. Prior to regulatory approval of Fintepla in June 2020, our indefinite-lived asset was not subject to amortization. Upon completion of the IPR&D program, the indefinite-lived intangible asset was reclassified to an intangible asset subject to amortization over its estimated useful life. As a result, future reversals of deferred tax liabilities related to finite-lived intangible assets provided a source of income when assessing the realizability of our U.K. net operating loss carryforwards. We therefore recorded a $17.4 million income tax benefit in 2020 with a corresponding reduction to our valuation allowance on our U.K. deferred tax assets. The income tax benefit included the effects of foreign exchange differences on remeasurement of the deferred tax liability. An immaterial portion of the adjustment for foreign exchange differences was related to prior periods.

Liquidity and Capital Resources

Excluding gains from two discrete business divestitures, we have incurred significant net losses and negative cash flows from operating activities since inception resulting in an accumulated deficit of $1.6 billion as of December 31, 2021. For the years ended December 31, 2021 and 2020, we incurred net losses of $227.4 million and $209.4 million, respectively. We expect to incur operating losses and negative cash flow for additional future periods due to costs associated with the commercialization of Fintepla for Dravet syndrome and pre-commercialization activities

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related to Fintepla for LGS in the U.S. and in the EU, the advancement of our clinical programs related to MT-1621 and CDD, and other infrastructure support costs. In addition, excluding amounts accrued for contingent consideration related to our acquisition of Brabant, we may be required to pay $100.0 million and $50.0 million in milestone payments upon regulatory approval of MT-1621 by the FDA and the EMA, respectively, related to our acquisition of Modis. These contingent consideration payments have not be recognized in the consolidated balance sheets as the regulatory approval contingency has not been resolved and the consideration is not yet payable. Historically, we have relied primarily on the proceeds from equity and convertible debt offerings to finance our operations. Our recent financing activities include offerings of common stock and convertible debt.

Underwritten Public Offerings

In March 2020, we completed an underwritten public offering of 9,798,000 shares of our common stock at an offering price of $23.50 per share, including 1,278,000 shares sold pursuant to the underwriters' full exercise of their option to purchase additional shares. Net proceeds realized from the offering amounted to approximately $221.7 million, after deducting commissions and other offering costs.

2.75% Convertible Senior Notes Due 2027

In September and October 2020, we issued $230.0 million principal amount of 2.75% convertible senior notes due 2027 in a private offering (collectively, the Convertible Senior Notes or Notes). Total proceeds realized from the sale of the Notes, net of issuance costs of $7.5 million, were $222.5 million. The Notes are governed by an indenture (Indenture), dated as of September 28, 2020, between Zogenix and U.S. Bank National Association, as trustee. Under the Indenture, the Notes are senior, unsecured obligations of Zogenix, are equal in right of payment with its future senior, unsecured indebtedness of Zogenix, and structurally subordinated to all indebtedness and liabilities of its subsidiaries. The principal amount of the Notes was issued at par value and the Notes accrue interest at a rate of 2.75% per year, payable semi-annually in arrears on April 1 and October 1 of each year, beginning on April 1, 2021. The Notes mature on October 1, 2027, unless earlier converted by the holders or redeemed or repurchased by us in accordance with their terms prior to such date. The Indenture contains customary terms and covenants, including certain events of default upon which the Notes may be due and payable immediately, but does not contain any financial covenants. As of December 31, 2021, we were in compliance with all covenants under the Indenture.

Material Cash Requirements

Our primary uses of cash are to fund our operations as we continue to grow our business and discover further indications and uses for our therapies. We will require a significant amount of cash for clinical trials and research and development as we invest in our therapies, the commercialization of our therapies and collaborative arrangements to expand our distribution channels. We expect that our sales and marketing, general and administrative, and research and development expenses will continue to increase as we increase our sales volume, expand our marketing efforts, increase our headcount to drive increased sales of our therapies and continue research and development efforts to further enhance our therapies. Our future funding requirements will depend on many factors, including, but not limited to:

•our ability to successfully market and sell, and the level of demand for, Fintepla;

•delays and cost increases as a result of the COVID-19 pandemic;

•the costs incurred to manage our commercial infrastructure, including our sales and marketing personnel, and costs incurred under our agreements with third parties for warehousing, distribution, cash collection and related commercial activities;

•the rate of progress and cost of our clinical trials and other product development programs for our product candidates and any future product candidates that we may develop, in-license or acquire;

•the timing of regulatory approval for any of our product candidates and the commercial success of approved products;

•the costs of filing, prosecuting, defending and enforcing any patent claims and other intellectual property rights associated with our product candidates;

•the costs, terms and timing of manufacturing for Fintepla and our product candidates;

•the effect of competing technological and market developments; and

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•the terms and timing of any additional collaborative, licensing, co-promotion or other arrangements that we may establish, including our ability to secure a global strategic development and commercialization partner for Fintepla.

Until we can generate a sufficient amount of product revenue and cash flow from operations and achieve profitability, we expect to finance future cash needs through public or private equity offerings, debt financings, receivables financings or corporate collaboration and licensing arrangements. We cannot be certain that additional funding will be available on acceptable terms, or at all. If we are unsuccessful in raising additional funds when needed, we may be required to significantly delay, reduce the scope of or eliminate one or more of our development programs or our commercialization efforts, or cease operating as a going concern. We also may be required to relinquish, license or otherwise dispose of rights to product candidates or products that we would otherwise seek to develop or commercialize ourselves on terms that are less favorable than might otherwise be available. If we raise additional funds by issuing equity securities, substantial dilution to existing stockholders would likely result. If we raise additional funds by incurring debt financing, the terms of the debt may involve significant cash payment obligations as well as covenants and specific financial ratios that may restrict our ability to operate our business. If we are unable to maintain sufficient financial resources, including by raising additional funds when needed, our business, financial condition and results of operations will be materially and adversely affected and we may be unable to continue as a going concern.



The following table summarizes our cash and cash equivalents and marketable
securities:

                                        December 31,
(In thousands)                      2021           2020          $ Change
Cash and cash equivalents        $ 101,180      $ 166,916      $  (65,736)
Marketable securities              200,548        338,193        (137,645)
Total                            $ 301,728      $ 505,109      $ (203,381)

As of December 31, 2021, we had cash, cash equivalents and marketable securities of $301.7 million, compared to $505.1 million as of December 31, 2020. We believe our cash, cash equivalents and marketable securities, together with the cash we expect to generate from product sales and under our collaboration arrangement will be sufficient to meet our anticipated operating requirements for at least the next 12 months following the date of issuance of these consolidated financial statements.

Sources and Uses of Cash

The following table summarizes our cash flow activities:



                                                             Year Ended December 31,
(In thousands)                                                2021              2020
Net cash used in operating activities                    $    (185,305)     $ (167,531)
Net cash (used in) provided by investing activities            137,395        (165,100)
Net cash provided by financing activities                      (17,826)        437,477


Operating Activities

Net cash used in operating activities of $185.7 million in 2021 was primarily attributable to our net loss as we continue to invest in research and development related to our various late-stage development programs, expansion of our infrastructure to support the commercialization of Fintepla and anticipated growth. Non-cash items included stock-based compensation expense of $35.1 million, amortization of debt discount and issuance costs of $8.8 million related to our convertible senior notes and intangible asset amortization of $7.9 million. Net changes in operating assets and liabilities totaled an outflow of $14.3 million principally due to the timing of vendor payments and increases in accounts receivable and inventory as a result of growth in Fintepla product sales.

Net cash used in operating activities of $167.5 million in 2020 was primarily attributable to our net loss and research and development spend related to clinical trials and manufacturing process development for Fintepla. Cash used in operating activities included R&D expenses related to ongoing open-label clinical trials for Fintepla and manufacturing process development for Fintepla and MT1621, commercial preparedness and planning

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expenses including additions in headcount to build out our sales force of key account managers and general and administrative costs to support our business objectives.

Investing Activities

Net cash provided by investing activities of $137.4 million in 2021 was primarily attributable to maturities of available-for-sale marketable securities.

Net cash used in investing activities of $165.1 million in 2020 was primarily attributable to net purchases of available-for-sale marketable securities.

Financing Activities

Net cash used in financing activities of $17.8 million in 2021 was primarily attributable to payments of contingent consideration for regulatory and sales-based milestones related to Fintepla, partially offset by net proceeds from the issuance of common stock pursuant to our equity incentive plans.

Net cash provided by financing activities of $437.5 million in 2020 primarily consisted of net proceeds realized from the issuance of our common stock in a public offering, the issuance of convertible debt and proceeds from the sale of common stock under our "at-the-market" program, as well as net proceeds received related to our equity incentive program. In July 2020, we made a $15.0 million milestone payment pursuant to our purchase agreement of Brabant in 2014 upon FDA approval of Fintepla.

Recent Accounting Pronouncements

For the summary of recent accounting pronouncements applicable to our consolidated financial statements, see Note 2, Summary of Significant Accounting Policies, in Part IV, Item 8, Notes to Consolidated Financial Statements, which is incorporated herein by reference.

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